NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10008363

Scaffold Ga0315899_10008363


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10008363 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11092
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1000836314F005293AGGAMTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGRELSVQVFNYRKEQVVRNRIARGLRRAQQRAWVEKKRGYFTPARFTLGNVVNF
Ga0315899_1000836320F006181N/AMTTDMSTADILERVFAEWNHGSGMECEMFVKSKKRSLCVNDIVCVNGVYFQCASFGWNEVSLAYVVDLENEVSAHPSRTEGAWFALMDVMWERQNTVVA
Ga0315899_1000836321F082581N/AMNSTSTKTAKVGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKFTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTVNVSEPVTVEQPVTA
Ga0315899_1000836322F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSKKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0315899_1000836323F015582N/AMNTNIDPELQAEQAEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPGFMPVYDALSDPEYNQSLGKYQENTYSFSSRDLRSSSNS
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