NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10011298

Scaffold Ga0315899_10011298


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10011298 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9536
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034850Metagenome173Y
F052371Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1001129817F052371N/AMTTSQKLTDSEALDLERFKYARTSEKLNTVSIALVVDELIRGMHKLGIKGDKIPNKEELSVMYKSIVEEYPNIKLGELTLAFDLASKGKLDMEAETYQNFSVLYLHRLLRAFARYGMQKLNEIKPKEESKWQPRFVTDDEKIETAFDCFKKFRQWDNIVFGVDVFKILHKRGNIIVTPSETYEKVLTAMNEKMFEGSRQDKIDIKNKMKDDDYMEHQCYRMAVSEYFTKLINRG
Ga0315899_100112985F034850N/AMEEDLVLGEGEEVEYVEEAEAYTYPEYISASVEVLTMLESANPMTKEEMEKVQELKKLCFEMLEFSVKSMHQTLFTNDIDC
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