NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10124711

Scaffold Ga0315899_10124711


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10124711 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2640
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F030094Metagenome / Metatranscriptome186Y
F081267Metagenome114N
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1012471110F007525AGGAMKTYEGVTVEYKEVIPTSKQMAEFYVWGEGYESYATIRYEDRVVEVERGGEMYLSIPDVTNGELSEHYQSIVRYSDDLSDIGINDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNSDMGEVYDTFYE
Ga0315899_101247116F030094GAGGMKLRGIFEGTFESVWSMEVPQLEWESYLDKNPDFDENDRDDIQEMWDYFKRVVGCYDECDDTVDTDVIMTGIETYGVEVEIN
Ga0315899_101247117F093864GGAGMYNYNVEFVLEAMVMITHVSFDEPDLPDDFIIQEARNNILSYYKIDPEVLHLQDVIVHEV
Ga0315899_101247119F081267GGAGMSYQHHWVVVYDEDWGAFMVDIETTMAKLSEDQGVVYNKDTGKWEFMEEGSELQLEYLRLEEILAYNLTRLDLTAERV
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Institute for Fundamental Biomedical Research
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