NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10206488

Scaffold Ga0315899_10206488


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10206488 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_102064882F019614N/AMNTASIATNKIQVEYSAIPGDNREFLTFSVPNGWDDVKKLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0315899_102064883F006181N/AMTTDMSTADILERVFAEWNHGSGMECEMFVNSKKRSLCVNDIVCVNGVYFQCASFGWHEVSPEYVNKLEESVAAHPSRVEGAWFALMDVMWERQNIVVA
Ga0315899_102064884F082581N/AMNVNTINSTVNSTSTKTSKVGRPATNLKLILNKSFTLKDLQILNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQSGRKGKPANIFINSKVYKANLANLAKSKVTINVNEPSTVTA
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