NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315908_10001666

Scaffold Ga0315908_10001666


Overview

Basic Information
Taxon OID3300031786 Open in IMG/M
Scaffold IDGa0315908_10001666 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16580
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055440Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0315908_1000166610F055440N/AMKSILCFLSVLLFQTIAAADSPLPADFKTKLQTTLARHLNQLLRDDGSLAELKGKTSEGSGAFTFYLMNERTNEQKYRKAALSLVDQVLRDMRATKFGVLPIKEKEKGGGKTIIGGGPPALGNYASGLAYILHKEGGRSDDLKYIATVLDRFPWSESGWWASTIDVATGEPKEPITKPGIINKTAAIAMAAGMVSLYVRDIDPALSASLKHKADKCIYGQILPAQLEDGFWHYSLLDKDPKDKDVLGYFMLTIEELMKLQRFNPAYREEKLTAALRKAQAFALKHIAPMTDPNTGTATTEHATRGTPNHYAIDDEAKRSFQLGLVLIGGGHTEEGIKIMTTALDHFPIGNGGQDGAHAAEPSVLILSGY
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