NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10000935

Scaffold Ga0315900_10000935


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10000935 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47183
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F023555Metagenome / Metatranscriptome209Y
F025977Metagenome / Metatranscriptome199Y
F083779Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1000093514F083779N/AMKKMIFDKDETRNLMMMLQSEDADNHTIAFQSLKNVDFDKYVGELLVLYKFGGHTMENWMINCKKIATKLLDIKPETPLSSPKTLSLITKHRGSKASVELFMEFFIRDMSRMLESIGYPTDKFEINIKFKDDGQTRES
Ga0315900_1000093522F023555N/AMSSNIRKEKEREFYVQHMDTFKAMGLADPFFTIKTAFFKKGKFGRQCQFFEWELKKGEDVYMEFYDNVYDDNSKIIGMNPMFEDRQLFKLKYNPFYDEEYEIIEGYDSEGKPDKKYLIPVNEMMAVLPSGQEISYALYEKRKEETKLEVPQLQKSLSIFPDFEEEFAPKVEVGSSNEEIADAPLSEITIRDLAAIMLMKPVSARPWLNDLIKQTKSEI
Ga0315900_1000093524F025977N/AMTELFSRLISEGLSPNSFYVLYCIKENIVPHNFVNKELECKRLQMNQWLTESLELTDKSIIFIVEIDGYFKRSKKKTSKDLMGHNFMQNIDAYVNIFPNKKLSSGKYARVPAKNLENAFRWFFDTYNYEWEIIFLATQKYVLEYESKNYDYMRTAQYFLRKQNIDKSWDSDLATYCEFLKNSPEEDKDVFSELIV
Ga0315900_1000093551F000716N/AMEKLKQQIRNYQLQPGKTYMQYEQDKYSIYQNYLYKRALYGLDAINQEELATMCSKKKQRIVNVYKRAQVVLNTFKQKLTIKYSNSLFNILFPNSNLTKELVNLNETDEKFKNTLTFKDLNISKDDIITIFIAEGVLPKNFLSLTEAPISLPMLKNANKA
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