NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10067859

Scaffold Ga0315900_10067859


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10067859 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3646
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066716Metagenome / Metatranscriptome126Y
F079990Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100678592F079990AGGAGGMKKALKKGYSKKPANQGSAGKPNVQKPMMAKKASSKGGKVYQTTPPSGTRGSKNK
Ga0315900_100678593F066716GAGGMAEKANQNFQVSATGGAGSGGQAAQYAAGIDNAGDFYELQTQATMSKSGVQLPNRGNPVTPKMPVGDIVPLNAPTLYPEEGVDTGAALGPNAGQEVMAAPAMLAAQNNEDIAALAAYLPFYAKVAESPQASNATRNWYRYIRSQIQGQAQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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