NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10081053

Scaffold Ga0315900_10081053


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10081053 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3246
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F022857Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100810535F022857AGGMDPIVVPKVTVSFAVDVEVEYDPFVGKTPTEMAVALQDEIDELLFEASSGVVGVFTSITSIAQ
Ga0315900_100810538F001018N/AQQSSIPFQHHLIMTQITQTKLKELNVLQLYEHYGALERSLPLLTPESQDMARAELETCAKLRSEKIDRIHYAMASHEDAVERVKQEIELLSQARRHHEAQLRGLKGLLSWLRRALPKDENKITGCKYQFVLVKKKDLTVEISSDVEQWQADERMQFCIEQEVTTTKQTVLRSMDGTIFETKIEPKTKTEIIPNLDAIRNAYQTGQPIPHGVKVTQDYSIRTKRIVGEPGVDEGLVAVETPEHLGEVLREAGTSD
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