NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10415295

Scaffold Ga0315900_10415295


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10415295 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1055
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022649Metagenome213Y
F048309Metagenome / Metatranscriptome148Y
F048996Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_104152952F022649N/AMLIIKNPNDIKGMNFVDGRFTLREVEIYDERYKFGFKETNRGRWVYVDVYRNPKWDSERGENMYQVDNGRFKSHWISAKWFGEIKNVKFTFTEALKLL
Ga0315900_104152953F048309N/AMLIIKNIDKVMNMTCYGRQIYNISTHRNKIGEESYVFEFDAIEDGQVPTGYNKPKEIHLVRNEYSGTYRLFCMGLQVATERRIDLSEIKCLTSLLVEISEVLRKTKYWWEHSKTN
Ga0315900_104152954F048996N/ALKYPKSYEKQNIGGNIQKQINMLVINNIEKLENKTIGAWRIEGLETDFAKTRYYDYNYTIRLSRNGVGAAIIIERTAGEYGYNVSIAYEEYDNIISITPWPKDRL
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