NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10560104

Scaffold Ga0315900_10560104


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10560104 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_105601041F012862N/AAFKPSRSLVPLSGGTKRRHTFINKASVMEAGMPLKISPRNATRLVFESDGETVFMPKGASVTVKRPGGPGVKNQYFLAHSRFFTGQLVNQSIKNSGFQRIFNAGMAKALSLPSGIKKVQYKFSPNLVRSQADSALAASFGGVL
Ga0315900_105601042F000258GGAGGMTANFKLDAMLELRKFLWDELKTRNIFDEDDYWSDNLNENIVPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQILFTIYSTDFSEINEIRNFMTDQFRRMDESARDVNYWSGLSDKFKFFSIFVADISPT
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