NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302319_10490325

Scaffold Ga0302319_10490325


Overview

Basic Information
Taxon OID3300031788 Open in IMG/M
Scaffold IDGa0302319_10490325 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0302319_104903253F003764GAGMQIQLDSPYAHDENPAALLTGAEIEAAGLYHCLKIVRLWSQSNALARPRREEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILEDWECPPAEQGILFPIADDPQTAASPATARK
Ga0302319_104903254F038518N/ALRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
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