NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318557_10063605

Scaffold Ga0318557_10063605


Overview

Basic Information
Taxon OID3300031795 Open in IMG/M
Scaffold IDGa0318557_10063605 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1580
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F045282Metagenome / Metatranscriptome153Y
F057529Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0318557_100636051F057529N/AAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFAREGFLTTSGKWSP
Ga0318557_100636052F006575GGAGMTIEPGTDTSPYLGLRQAVRPAILAHRLLAGDQERAGKLDTECEDLLYLTGELLKAAGRARILATAPPPRLPDEGGVLGEGDRQAQLLEAYSDVGLLWAKVVGSSLALAAALIERGEWDDVRALAGFLAGAGEERAADELRIQLGQAAWEAHHEQLHAVSNDMPPAAIGPAIDALRAVLREVPEEYPDRNREVNRFLPPLASAIYAIMKEQDAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICPRPGGMTT
Ga0318557_100636054F045282N/AVTGIHADIDALKGLRGALVRYRHAQREVTARGEDQLRVARASLEAKAGHCRTQLELNQAELGACQDRAAREAADETAGGTVDCS
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