NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318576_10054794

Scaffold Ga0318576_10054794


Overview

Basic Information
Taxon OID3300031796 Open in IMG/M
Scaffold IDGa0318576_10054794 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000859Metagenome / Metatranscriptome858Y
F005719Metagenome / Metatranscriptome392Y
F007338Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0318576_100547941F007338N/AAFHNAVSRFQDWTANVAEPRVRFRGKFCPISEVCEEVANLSNLLPKFMLSILCKETKANDDVLALKLDETYRGAGRHLPRLIERRKDEIRRRKVLKSPSLDHKSGRE
Ga0318576_100547942F005719N/AMTIDLTRDEIWFLKALRAAGERGRIVSAFASNAGLARLVEMQYVTKQPQSERKTLYVITDRGRQALANAPQ
Ga0318576_100547943F000859GGAGMPREEIRSARSTGPTGSEFFNALQEMSRDWMGRATAEVELGLKLSKKLTAAHSVPDAITAYQEWLSEEMNARAEDARLLMSNGQKFMDASSRLLSSSWTSGSMST
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