NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318576_10082813

Scaffold Ga0318576_10082813


Overview

Basic Information
Taxon OID3300031796 Open in IMG/M
Scaffold IDGa0318576_10082813 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007149Metagenome / Metatranscriptome357Y
F014436Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0318576_100828132F007149GGAGVQALLAVVLLVGIGAGAGAYSGMFYVTGSQFYEACRQRQAKEKIDGGFKDAEADNPSQAALWGSCTPIMTESMGNAGFAIGSSSPEATEDAKTLASACPDAFTEMPVFPKFWYTVAVDVIEKNGGPSLIDRVAPAGWLIERAMKARWPRCVEAARPYIARARNGTQSNAPKQ
Ga0318576_100828134F014436GGAGGMTAFLLLVTWLAYGQPPDHYQVPFSSNEACEAARL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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