NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318576_10107375

Scaffold Ga0318576_10107375


Overview

Basic Information
Taxon OID3300031796 Open in IMG/M
Scaffold IDGa0318576_10107375 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1279
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016870Metagenome / Metatranscriptome244N

Sequences

Protein IDFamilyRBSSequence
Ga0318576_101073751F016870N/ARAAMYDRTIDRISDGASEFLVQFYLNSPKLSVSVLLAIWLILFFSALWYFILVPASSNTVMNGSFETRLVGWGTGWLEDFPAHRGAARLHQFLATRSSQTGQLAVADWRSDPAEHRPGGRFALLVEHRSDKQSEVYSTLSQRIRVKPRTGYNVRFWAKVDQMEHDGDLWLSPNGGSVAWDEPKMEIAGAGKGWQLYKLDFNTGDRVDLDIRFVAEGPLKVWIDDVVVSRVPAGETWVEKVTSWLHSLWTILR
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