NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318550_10045004

Scaffold Ga0318550_10045004


Overview

Basic Information
Taxon OID3300031797 Open in IMG/M
Scaffold IDGa0318550_10045004 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1964
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007833Metagenome / Metatranscriptome344Y
F018525Metagenome / Metatranscriptome234Y
F054013Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0318550_100450041F018525N/AVTDEAHSPMIWGADWLNRLELIIVIEDRFADVVITDEEVDQLEVVGDLIRHIENVDHERRRRSIVEAPLQ
Ga0318550_100450043F007833GGAMPEWFDGVAQEWSLIGAAPISFAIALVVVIIVVWAILHWFHRRMLSSKDIRIEVLQSRLADYRNVLEGASPREAAYKITQLKGKLEAIKGMPRDENTIYQKGKRIAEVVGIRIDPANNSVVFDRMRIAGHLDQATHVEFKNLVLAFVGLEGFSQTRQGRTIVNATLCDSEGLWTRFYAPGLSS
Ga0318550_100450044F054013N/AMGWAQEWSLIGAAPISFAIALVVVIIVVWAILHWFHRRMLSSKDILIEVLQSRLADYRNVLEGASPR
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Biomedical Sciences Research Center "Alexander Fleming"
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