NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318550_10457282

Scaffold Ga0318550_10457282


Overview

Basic Information
Taxon OID3300031797 Open in IMG/M
Scaffold IDGa0318550_10457282 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004482Metagenome / Metatranscriptome436Y
F026313Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0318550_104572821F004482N/ATKDEVADHVQAEVSGQLEELGERTREAITAATQKVIAEFDRFGESLLGKETYWQKASGRRAVTRPDTDVVPPDILPGEDQG
Ga0318550_104572822F026313N/AHGCCAFDPDDPGSGAGFIGDGQMRVLNITIRRAVHEALGQVDLARGAAQQLHRRELRADEQAALDFCDFQLGTVHDYMEPPGSPELEQAYNRYVSEPDVNR

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