Basic Information | |
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Taxon OID | 3300031799 Open in IMG/M |
Scaffold ID | Ga0318565_10029529 Open in IMG/M |
Source Dataset Name | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2472 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004352 | Metagenome / Metatranscriptome | 442 | Y |
F006575 | Metagenome / Metatranscriptome | 370 | Y |
F017887 | Metagenome / Metatranscriptome | 238 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0318565_100295291 | F004352 | N/A | MISRPDQDGDRQLRLLDDAWGKAAEHWRDGTARQFGAAQLTPLLQESRSYLEALRKLMDVLEAAERDTEG |
Ga0318565_100295294 | F006575 | GGAG | MTTESATATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILADASPPRMPEEGGGDRQAQLLEAYADAGLLWAKVVGSSLALAGVLVERGEWEDVRALASFLASAGEQSAAAELRIQLGREVWETHREPLRAVSNDMGTAAIEPAISALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVQTSLDELAAEFEGICRRPGGKTT |
Ga0318565_100295295 | F017887 | N/A | LLLATLLSAAYQRSPAQVRFTIAEFTRPSSPFHGFFDPVRSLPHEVRIADRRTAAEELDDLADDLEARLEGSGSGLGGVAQPDRFFLLAGMHRWHELLAEGDYGRPSEISARLVRLADKGPDAGIHVVAWTDGYSTAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLFAFAREGSLTTSGKWSPA |
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