NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318565_10188821

Scaffold Ga0318565_10188821


Overview

Basic Information
Taxon OID3300031799 Open in IMG/M
Scaffold IDGa0318565_10188821 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041268Metagenome160Y
F092245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0318565_101888211F092245GGAGMTLKGWMLGNKNDPAARNARLRTPTATGLADVDPREPGFNTFGRRVAPGGEPVHLGPYAPLIGAIREELEQFVAHQLRLHLAIAERDRYVLASIEVECDGGEGERELLRRFVREFRPEQIKQYLAKEVIAGLRNAGAIDLSQFAGLNAEREEAGASRDEERYGDLIAELASGAPPGAARPYRVTLVGRWSELAVAAVESRASPREGTRTPLAARAVGIEIEDAKGGRRVELAA
Ga0318565_101888212F041268N/AVAGPFVWTFDDSFADCLADIEDTLRRAIVQLNDIGSIVVLIELSLPALKHRVDAGEAIQPAWSRFLERVSQRYGLPAPPRVRPHKGAGPLATLVIAYRS
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