NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318565_10270117

Scaffold Ga0318565_10270117


Overview

Basic Information
Taxon OID3300031799 Open in IMG/M
Scaffold IDGa0318565_10270117 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)827
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001404Metagenome / Metatranscriptome704Y
F050690Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0318565_102701171F001404GGAGMSNEGRLQMRKTSLFAIAATVIVAGIGVWAASTTTTARVAPSTGDGIKPFQLMLNAKALPTVEFTDYTFVFPTN
Ga0318565_102701172F050690N/ANVWVYLSDLLENRIYGGFHRSTNIGFFYCNLQDKECHSETEWEALVKSYIE

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