NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10034629

Scaffold Ga0310122_10034629


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10034629 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2812
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F021863Metagenome / Metatranscriptome217Y
F033048Metagenome / Metatranscriptome178Y
F042931Metagenome157N
F081450Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_1003462910F042931AGGAGGMMNREEFYISDWDMMMKIWPNCPVDGCKNKINLNLNTGKCFPHSEGSYQWKNFKILFKNTFINRPKLLWRKMRGPIT
Ga0310122_1003462911F033048GAGGMIDKTIKLTGEYPSDFKPTVPVQEIQQYFDAYSFHDGRMIGGSKMDYHEKHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLV
Ga0310122_100346293F021863AGGAGMAKKKKDIPFHIAHNYKQYELKDGTKFWAKDEENAKLYRKKVEGK
Ga0310122_100346295F003091AGGAGMTMLPRKPITKPGEGKVREKHLSREYYLEERYQISVGLKGPKRLEGEEFEDYKLRMKAENGLLHEYLRGVWIKNEAD
Ga0310122_100346298F081450AGGMTEFEEKSCKVLGVILFLLVVMTWLQISGCYSPPQPEMEGEPIPDYIDEVEIGNLA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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