NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10001507

Scaffold Ga0310121_10001507


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10001507 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23665
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (67.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F006919Metagenome362Y
F015261Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100015072F002715GGAMPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIKLNTRQEDYLRNSSSMTDEFKILHTRIGDLHDKQLAANKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKD
Ga0310121_1000150727F015261AGGAGMPVNIVWEDGDATISILCDGCDKEYEILSKDTAGLEMCPFCGHYLEVESETGEVDETEEDSWD
Ga0310121_100015075F000245GGAGGMKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPSSDMMIHVFLRPMKGKKGMMAFNYQLEDK
Ga0310121_100015076F006919GAGMKSFIQHLREFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHVLSAEDLYKLKKLEGGKKTISAFFTMMSRYLEGGIAAGGGVVAEMEADVIVSARDDIMSQVDNKGRRWVEMSWFENAQSYGTGPAFGKVERELNDLIRKLVLKHLEPILGNRARTEHEYVLWGNMKRELKDNKKLSLVIKDYFDGVEKIIKDNKEVMGSIFYGYAKSKRMTDNAWDEQVVNNIEITKLHYIPREEEVEDEEQQENIDAFVAKYKIPRKRWEYSSELEIYTREVTQAEVRTMGK
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