Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10012800 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10012800 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6438
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

6438

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F064801	Metagenome / Metatranscriptome	128	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100128002	F001235	GAG	MGTKLNVDTGGLDIGKKLWDKHQADEYTHVDNYKEAICINCFSKDATAATIVDICGECAGKRGREPLLATVTQKMYGLCFFCGKHRFNIEQINARFCRKCHRKIANVTKEYNKKGGMFGADPFWISMRKKHGKDWKEIMNKNLGNRR
Ga0310121_100128004	F064801	AGG	MGFVDTLKGIFSYRSKSFTESTVRPSIAQPYMATDTGAKLPIFPFPLIMIYELADNVDALRIPIETVNREMFKNGFEIVEKWKFKCANCSKEFQYAPLAGDQRDEQPNSTNEDNESTIGSTTSSKAAKKPQFPVRQPSSNLEGPLQCDTCGSHDLRRPTPENRQVLEDMLNNPVNANEQSLEDVVRMLERDLEIADNAYLLVLKNYWIDDKTGEIDDEKSEIKELIRVDPPQVAMIADSDGRVGYDDKHNPVFVCPKFEHRGKRLVGDRCDICGTKALKAIIEVNSVYSIGIPQPKRVIYGEGEVIWRAGKYRPGLLYGYSPIYAVWSKVMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKPGGKNMAQWLDFTGSLKELEFIAVRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQDILLKSFLSKLAALRGIDDWELRLKSGEETDRLRDLQIQGVEIENMKSLQGLGFEISRTHTGEFKVSKDPVVTTADMATAEGTLAENPGALKPGGRGRGTAAPKEDQQRFEGEPQHKLPSKVGGIAGGHPARGHGTSLSRKNFPDGITPLNYEAVKRTLQTSVDFGWTKQKTEIELRSKAFMTVRQARQIVKDELGQTRRWEDDEKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10012800

Overview

Ecosystem & Geography

Associated Families

Sequences