NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10028117

Scaffold Ga0310121_10028117


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10028117 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3981
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000942Metagenome / Metatranscriptome826Y
F021858Metagenome / Metatranscriptome217Y
F029555Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100281171F021858GGAMINVNRFENRIVKFKRISAGVETIKEAEVRQIDYDQMADVPRSVTARFVSPLNAIITLDYDTTFEKFRGPLGPDMLESDFDIKEFISSSKMGITDRTIRSPKRNRPKF
Ga0310121_100281176F000942AGGMSNPYELRFRLLEMAQGYLQDEYSRKENVAIDAWNFAQEQGNATTRLHKELQPKSYTIEDIKKKATELYEFVENK
Ga0310121_100281177F029555GGAGMSEYKAGYRSEVARYELIPGERKLFEKHIATRELVDLAGRIERGEPHEVNPAYGGKGYTYLYPETEYLGRVKVKLIDNKWKLDWEDDRGRIY
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