Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10031404 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10031404 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3723
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3723

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F005336	Metagenome / Metatranscriptome	404	Y
F006919	Metagenome	362	Y
F013815	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100314042	F013815	GGAG	MYFVQYEKTLPPWYSGTDKIQAETSEDAVKEFYKRHDPFEERVRSVRKVQDTYQK
Ga0310121_100314044	F006919	N/A	MIGFKQYLREFAIKSTSDLVFEVGSQGLASSALKIPISGPMFKRIWPDTIRSTVFHTTDFEGLKRLKKLEGGKKSISAFFSMMSRYMEGGIATGGGIVAEMEADVIVSARDDIMSEVDKQGRRWVMMSWFENQTRERSKFVAVERELNNLIRGLVIKHLGPIMGDTEVRKAQEFYLWADMKKHLKGDGKKLRLVIKDYFDGVERIIKKNKEVMSSVFYGYARSKRMTDNAWDEQIVNNIKVKTIHLITFTQTPNKKEEEIIEYVNSTKWPLKTWDVSIDLEVYTRQVVAKEIGRKI
Ga0310121_100314045	F001493	GGA	MKTFKQYIKEAPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESIRSKAFHLTDDEGVRKLKKIQGGKKSISAFYNIKDFIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNSSTASDPGLGGRSKLKKIEKDLQDLLVEILIKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGEKALWDELVVNNFKIQKIHVGPEFADDFRDDDDVEGFPFEVYDDVGDMVDYITRTVQKIKL
Ga0310121_100314046	F005336	N/A	MDSTYIDSGIKGGSGVVAELDANIIMSSKSDVLSMPDKTGRRWVELYNIDPKEKMHKELEKMLMDLAIKHDPKNKEFLKIEPDIGIGAWYKMQGDFQDDGKKMSLIIADYIDGVNAILKKHKKEIQSAVHGYYVRRGTVKYKHPSGRMVGGDSKISEWSAWDEQVVDKIKIEKVHTYNTATRPADWVKDSVIPRLGKIPHKHWKSVKELSTYISQVAQAEVRTLGNSKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10031404

Overview

Ecosystem & Geography

Associated Families

Sequences