NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10033855

Scaffold Ga0310121_10033855


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10033855 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3561
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015739Metagenome / Metatranscriptome252Y
F018017Metagenome / Metatranscriptome237Y
F089026Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_1003385510F089026N/AMKIKKSYKNRCITEFIEKYSDQSDRQFFQVLKKWRDLEK
Ga0310121_100338554F018017N/ALKNDSLNADNTTTKIDSLWANQQKIIPIPPLSSLHLHGSDCGGVRACHTCRGTRFVYIRSKWDNRITFKRCMACSGSGSINIPDL
Ga0310121_100338556F015739GAGGMIRPEKYQFNWKPKSKSKEDLELVRGLEQLVKDLDLTKTQLTRLALSTLLMQKLGFT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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