NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10047612

Scaffold Ga0310121_10047612


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10047612 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2902
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F021554Metagenome / Metatranscriptome218N
F030781Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100476123F021554AGGMIIEEIPFFTEFVLLGIILGFGYGFTKLFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLEGELNQAKTLQKYEPIIRIIGKPALKKVMSILDRV
Ga0310121_100476124F002100GAGGMSFRSQPGFKPALIKPTYDVANFGHDSVLPLNCLSGSTATLTPSTATFVQVLEDSRVPIDEVDMFITDSDKMAMIHAGNDTDADFSWEWTPDMSAQAYQISLNFAVGMKVSAYTSGNFKISDVQVIIKQVGGGEGDFVYLNKIIDPGMTNMAGVAEQVAIINFSTRVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYLGAAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNLLDTGIGL
Ga0310121_100476125F030781N/ATAVYTVSQSLTGYGSFSSNDFGNSLPLKVPIQPGCASLGATGTQATLALASYHNTHMPMKTSCKINTAFTNDVVSTGNTAFIMGVGYTKQ
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