NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10076138

Scaffold Ga0310121_10076138


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10076138 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2194
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004843Metagenome421Y
F008625Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100761382F004843GAGGMKWVFIIVLAALSLNGCADTADAETSAAITPVENQEGTTTTSSSETIWIAIVMTWRPVTYTIDKEFSSEVNCWNYYDNGVGESKILNSYGTQVLDYQGNKPGKEFHKKHRPPHREYPTRLYRGITDEQGQVWLTCDIKGRYKDL
Ga0310121_100761384F008625N/AMSGELAGNSLVWRHIRRENQKMMLDPLGYDPIIDIDEIHSRNRRKTDDPYIRATMKNADHKRWKDNTAERR
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