NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10078409

Scaffold Ga0310121_10078409


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10078409 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2156
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007837Metagenome / Metatranscriptome344Y
F016759Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100784092F007837N/ALVTGLVTQPLISARNLNLKLRTVVDLKTTAAQLVINYPGLHQALSNSVMIDNQDAVNAVTVRFNLQINAVTIPAGGQRIFNDAWIEQVNCTGPSTNTQITSQVSPIQQVAPYGQGVTN
Ga0310121_100784093F016759AGCAGGMSMEPIQRRMQNPAAGAINVPVNLVDQVTTLTFIQLGQANTILDMYNAVDPAGTATYEYGLDKNSISTGRTFFSNAMSTASAGRAAVGPLRINSGQLQMTGTPTTALAPALDQNIVIKFSNGF

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