NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10007166

Scaffold Ga0310123_10007166


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10007166 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8194
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007837Metagenome / Metatranscriptome344Y
F013596Metagenome / Metatranscriptome270Y
F094574Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_100071661F013596N/AMEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYISEVERKNRSLQNKLNSMQKGPELSEIGDLDGVLPDLIGQLDGILPKWASKFIKGQPDLINTVIEYAKSNPDKAKELIGRFVKIKPATKSASDDSVQGL
Ga0310123_1000716614F007837N/ALVSGLSVLPKISARNLDLKLNTVIDLKTTINPLIVNYAAQYQSLSNSIMIDNQDAANAVTVRLNRSTNTITIAGGNFRTFNDAWIEQIDCTGASTNTQVTSQISPLTQISPYGQGVTN
Ga0310123_100071662F094574N/AMYERFKQIQLERGKNATIRLNELIERDVKEADPQFKELNAVRSKDAPDIITPNPFLKTQTNSLPEWEEYLKTLTIPEGNILLNHIIALRLKTKDFEDWRLD
Ga0310123_100071666F007837N/ALVSGLSVLPKISARNLDLKLNTVIDLKTTAAALIINYAAQYQSLSNSIIIDNQDAVGAVTVRLNRSTNTITIAAGNFRTFNDAWIEQIDCTGASTNTQVTSQISPLTQISPYGQGVTN
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