NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10532986

Scaffold Ga0310123_10532986


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10532986 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016878Metagenome244Y
F017398Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_105329861F016878AGAAGMITFKQYLKERAPAWTESLSTMLFDLPREGLKDLKIPLSSPIFKRIWPESIRSKVFHLTDDDGVRKLKKMQGGKKSISAFYNMDDYIIQSGIKTEGGYVVELEGDVLVAAPDDIS
Ga0310123_105329862F017398N/ADGKKMSLIIADYIDGVNGILKKHKKEIQGAVHGYYVRRGAVKVKHPSGRMVGGDSEIKEWNMYDEQVVDKIKIEKVHTFYSPSYADRPKKEIVPQLGKIPHKHWNNARELSTYISQVAEAEIKSMGRSKP
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