NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310120_10041305

Scaffold Ga0310120_10041305


Overview

Basic Information
Taxon OID3300031803 Open in IMG/M
Scaffold IDGa0310120_10041305 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2746
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011446Metagenome / Metatranscriptome291Y
F025588Metagenome / Metatranscriptome201N
F035477Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0310120_100413053F011446AGGAGMETVVLGWASSQSWWGIATTIIVIANGITMTLRDKYAENIPILGKIWPILNWLSLNIANNKNDDK
Ga0310120_100413054F025588GAGGMKTYDKFKKELTEDGMLHGEYGTENPSTTIHYGPNDPEIVRTASITMTVPKYRLSESEKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI
Ga0310120_100413057F035477AGGAGMKTFKYFTEAKMARQHFQLIADVIAGLEISTTIKKGIAEKFADAFEDTNPMFKRDLFIKATKKKAE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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