Scaffold Ga0310120_10428910

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310120_10428910

Scaffold Ga0310120_10428910

Overview

Basic Information
Taxon OID	3300031803 Open in IMG/M
Scaffold ID	Ga0310120_10428910 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	673
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310120_104289101	F068933	GAG	MGKLDLLKQLHRELLMPKALPGMKGTIGKPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD
Ga0310120_104289102	F040140	N/A	CKLSMPKFGKKFEDTGFDGSKHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHFVWSKKQLEPGLKCELC

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