Scaffold Ga0310124_10207079

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310124_10207079

Scaffold Ga0310124_10207079

Overview

Basic Information
Taxon OID	3300031804 Open in IMG/M
Scaffold ID	Ga0310124_10207079 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1205
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	79.9957	Long. (^o)	-149.9767	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035475	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310124_102070791	F035475	N/A	INNNMKNAYITIVGNLSIRFDLHESMHIGPVIASANSNKSINFAYATCNSEIILQDMLNSTNFRGTNILVPEELFKRYVFFNETTCLPDFPGLKTLEIDPNNCTPQCLSLMLAVYFKPKIIFLLGYDLDNPIEFTRLKSIIISNPDVRFAYISNPLIKKLDDLDNCFCDTYIKYQEVIDARK

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