NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318497_10108260

Scaffold Ga0318497_10108260


Overview

Basic Information
Taxon OID3300031805 Open in IMG/M
Scaffold IDGa0318497_10108260 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1496
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001960Metagenome / Metatranscriptome611Y
F002957Metagenome / Metatranscriptome517Y

Sequences

Protein IDFamilyRBSSequence
Ga0318497_101082602F002957N/AMSTINDLDPDALISRLAGPLSPPDRAAFRAAAEDALTRVPCWGEGAIYRAVRAFRDPPTDHRASWDIDQEFGPSKLRDAPAIEYGGDLRHIRYRKQHAR
Ga0318497_101082605F001960N/ALAVKQAFYRLADEKRETILIACSKCDWRAAFSRDELIASHGADYAIPNLLNRLAAPDCPRLGSTWDRCGVHCVEPIRHRTT

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