NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318497_10403601

Scaffold Ga0318497_10403601


Overview

Basic Information
Taxon OID3300031805 Open in IMG/M
Scaffold IDGa0318497_10403601 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)765
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060005Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0318497_104036011F060005N/AELERQRDWALVAFALRIRIAILLALADYEQATRLADRAIEAAEAGEDDYVLVQVLNVLGAVEFDRATSKLKTPHARAHLSSLDHADALPLEADARKALHYFERARDVAKRGRYEFAAWYVAGNIERLEILLGRAERAIRPIRRRLRILQARGATYDEIVARSNLAWGLRTLGRYSEAAHELDVALRLAREGGTANVLLEFLEYDRSIVLDALGNGIEARASYRRYLRLIGVSGAQPDTAAPAPTAPSRPLEPYLL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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