NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316037_112060

Scaffold Ga0316037_112060


Overview

Basic Information
Taxon OID3300031808 Open in IMG/M
Scaffold IDGa0316037_112060 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003084Metagenome / Metatranscriptome508Y

Sequences

Protein IDFamilyRBSSequence
Ga0316037_1120601F003084N/AQDEKNELTGMIGRIFISDQAILNEPPPDNLVHSGKGLTFEVNYARHLFGNQVYAISGEVPAVFNLDEKLGSLYGVVPINYKQIFVTPSVRVNLFPATAVTPWVSFGGGFGHFSENSQLIYSAGLNPGKSTTTGVMQGGLGLDVSPFRHRFSHVGFRGEVRDFWSGAPDLPLADTGKSRQHNYFVGGGVIWHF
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