NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10000611

Scaffold Ga0308411_10000611


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10000611 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23932
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (88.24%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F019420Metagenome / Metatranscriptome229Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y
F075805Metagenome / Metatranscriptome118Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000061115F031016AGGAGGMATIRIWSGSRRVVCGEDYEFVKYEEFEGETLGSVWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWEGEATHAYIHVFPSMGGVNGAAAMFWRELAQAGIIPPLTVGLDE
Ga0308411_1000061116F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIEFDGELLGSLVVEVDEDRTDERAFYRLYDGCLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWYNDLVRVGAYDAPTLELDEWLSRYEEEE
Ga0308411_100006112F019420AGGGGGMATYRDVIFWSGATDGDCEATVIRARLLGMVIELGDEETRTPDTMTAFYEADGGGIIVYEVECWEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308411_1000061120F007976AGGAMLSTELARFLDVALDVQAPPYPGIHVADGMLVAASHVMLLVKKFENVVFLRGKGAISPKAAKVLVALVEATYIGSIEVNGNRVTVTAQSTWYDEKVGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSNNPKLKTLKEANAKDYVALVDSPHGGYELFRLRDIEDTHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQWGYTFAVTPFVKHN
Ga0308411_1000061121F043176AGGAGGMETYKIWEGERTFLPGDDTSKYKVFEITGEELGWFEDVIEGKTYYVYQTIEGEVVINIVEQNYGIGEPSRAVIYRFSNLEDAAQSEQRYALEELRLI
Ga0308411_1000061127F005631GAGMRLSVSVDVDNALHKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLAKTSRIVENTASYARYVYGMPQARVHRGRWAALKDAAEAALKEAIAVLKGR
Ga0308411_100006113F006252GAGMKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFLDGLAVFDVLRTPSTARWLRTRRGAMRKHREYDIKERLVKVEEIHQRQRRSA
Ga0308411_1000061130F105262AGGAGGMLVQETIQPLLRYFNANVTAPADTSVISIANAQAVRIVAHTGTVTGTASLQVHVNDTNNTNNSAQLTDKAITSLASNSSYEIFVTGAEAYAAKTLASHMFVRIAGTGTAQIAIEISAFPGRDIPASLPSNWTRVL
Ga0308411_1000061134F004791AGGAGGMDKPAEIYDIEAIRIDRAALSIRDAASVLNNELTAPVVARLIRKAIGDQADRFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDAIGDEGNE
Ga0308411_100006116F004307AGGAMFKELINHNGNGRERPELNGAYIGRFLGVKERQRPTFETRLSPEPVMEDVFVFEFEVEDAELDAPVRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVAQMTDEQLERAEEYVQTVAVGREYQLTIETKPSGWAEIVHIAPVRKARNWKKEEDEEVPF
Ga0308411_100006117F008499N/AMKKSRSEPRWKRKEREALRALQTIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELLGKERADE
Ga0308411_100006118F018115AGGAGMSDDVERFVRWYAHLPADAQLDRHAARALLRRALADREALAEYLLQHKCAPALLGEFINRHWNDAISDPPASAALRLALRVTQALERIEDERDRRAASWWFQLGLVPSARSLRLICKGINDAR
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