NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10001531

Scaffold Ga0308411_10001531


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10001531 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15765
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000153111F007976AGGAMPSSELAHFLSVAIDIQAPPFAGVHVADGVVAATDGVMLVTKTFSGEFLRGEGAISPKAARVLEALAEGTWIGSIEVDGNRVTATARSTRYEEKAGGEVAGEYCEVNLPDFYCPRVPIKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVDDPRDGGELFRSKADNDTHWYSVAQLRKGLRLFGRNSRLSVRRSNNGWLSFSDQWGYTFAVTPFVKRD
Ga0308411_1000153112F002982AGGAGVKLQFERHPHAICVVLTDAGECDRIITVARPSDAFDALALDIHTAAHKPLDALFALPRVVLVEIERRAGNWRVEVAYWNGALGTLAQYEEDAATLSEALARCVWALAR
Ga0308411_1000153119F032180AGGAMWWKIEEIPHQELEEWERAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308411_1000153120F005028GAGGMRDDDLRAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTYIRYFLRYHVPTLRESAVVGETYADPSAADAYLGLCWRLDENVLTVYTDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKPRNVVED
Ga0308411_1000153121F018115AGGAGMNDAEERFVRRYAHLAEDAPLDCHAARALLRRALADREALAKYLLNDECAPSLLGEFIFRHWNDAICDPVVSSALRLTVKVMEALDRIEDERDRRAAEWWFRLGLVPSTRVLRRLCEGINDAR
Ga0308411_1000153122F008499GGAMKTFRSKSEPRWKRKEREAVKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPQRVLDELLGKERKDE
Ga0308411_1000153123F004307AGGAMFKELISNGSRSERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTLEDVFVFEFEVIDADFGEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPARRTRQRKTKEDEDVPF
Ga0308411_100015313F005631GGAGMRVSVAVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWASVRDAAEAAKKEAVAVLKGR
Ga0308411_100015316F016404N/AMTTEELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFEEHPNADQNVLVIVDEAAFVKTV
Ga0308411_100015317F010840N/AMNLPFSQPLDKVTFGALAAATVIILAWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLNETEAEAIARKYYKYK
Ga0308411_100015318F051735AGGAGGMFRDVTIINGPVPKNGVADYERVRIKARPLGRPYAWDNGRAWNPYTTNGGFVLVYECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEKYASLAEARAGWRGWLIEYALGTE
Ga0308411_100015319F006418AGGAGMPKRRSAPAPRPAREIVIDSGDDFKIIFDRETKDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE
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