NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10001802

Scaffold Ga0308411_10001802


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10001802 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14602
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F075805Metagenome / Metatranscriptome118Y
F076715Metagenome / Metatranscriptome117N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000180214F075805AGGAGGMRIRVWHGWRAVHGGKDISRWEWVEFDGELLGTLVVEIDEDRTDERAFYRTNDGRIVVAEHRYGKWEAGGVDYGVVSVYADLDDAARRGRRDDLVRVGAYDAPTRELDEWLSQYEEEE
Ga0308411_1000180215F002982GAGGMKIAFERTPTAICAVLYEPGECDRIITVARPSDAIDALALDIHTAAFMPLDALFSLPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETEAATLSEALARCVWALAR
Ga0308411_1000180216F087842AGAAGGMITIWGGYVATDEVRVYLITFDGERIGGVDERNAQKTFYSTADGRVVVHEVRIGRRRGGRTYDQALVYVFDDLAQACMHLTVNPQHIAQTRGDAALPPVEAPTLTLEEWARGVGSY
Ga0308411_1000180218F007976AGGAMPSTELANFLRVALDVQATPFPGIHVADGVMAATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEGLAGATWIGSIAVLGNRVTVTAQTTRYDEKAGGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWQQIVENPRIKNVKEWSVKEFVALMSNPREGYELFRLKDTDDAHWYSVAQLRRGLRLFGARARLSVRRNAKGWLAFEDAYGHTFAITPFIKQN
Ga0308411_1000180220F043176AGGAGGMQTYRIWEGERTFLPGDDTGKYTVIEIVAEELGWFEDVNPDGFSGTAYYVYRTESGEIIINVVNENYGIGEPNRAVIFRFRSLEEAAQSEQRYALSELRLI
Ga0308411_1000180221F006418AGGAGMPKRRSAPKPQPAREIVIAEGEDYRIIFDRETKDYAVEYRGEPVGWRASESEARRLIEALRYEDAKRA
Ga0308411_1000180222F010840AGGAGMNLPFSQPLDKVTYGALAAATVIILTWALREFVGIDLPAEVQSALAVIFGYVVSYHISLNETEAEAIARKYYKYK
Ga0308411_1000180226F005631GGAGMRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKERGR
Ga0308411_100018023F018115AGGAGMSDEAERFVRWYAHLPPDAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFIHRHRNDALSDAPESAALRLASAVMRALGRIEDTRDRRAAEWWFRLGLVPSTRVLRRLCEGINDAR
Ga0308411_100018024F005028GAGGMRDDDLRAAMRFFAERLRGVDGDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKV
Ga0308411_100018025F076715AGGAMWWKIEPIPHQELEDWERALLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKVPEGAYPVGKWTLKKKGWMWYD
Ga0308411_100018026F025895AGGAMTDLIAWIIAGGVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAVVLAKVGWTFAASFAFEFLAILCAVTALLLAANVRAPGGGGGGR
Ga0308411_100018028F044842AGGAGGVEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADDWVERCVLYRSEDGRVVVHQLRLSLLDDGIDVAEVYILPALDAGEGERGG
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