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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031812 Open in IMG/M |
| Scaffold ID | Ga0308411_10002097 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13570 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002229 | Metagenome / Metatranscriptome | 580 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F002978 | Metagenome / Metatranscriptome | 516 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F015735 | Metagenome / Metatranscriptome | 252 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308411_100020971 | F002372 | AGGGGG | MPTRREDRLWSVAHQRSVHLRALLDTLDGIDVGVTYELDYYPYAVVELLRVREDAPPLVLRSIYISANRQWEYHSEYTLRVVEAALRLVEEYRSDPSLGGAEAVWA |
| Ga0308411_1000209710 | F002978 | AGG | VSDLRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVALARRAVATLRAAGADCSALPSPLPGSPPGA |
| Ga0308411_1000209711 | F004024 | AGGA | MPSERDYLRQLSSLTDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRSER |
| Ga0308411_1000209713 | F002229 | GGAGG | MVTLLTLDGVEEIDYVPSDAEIRASLDDAGLYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWAADGPGERGYWSAALSAVVGDVCAMYGGCVED |
| Ga0308411_1000209714 | F002795 | AGGAGG | MPVTTGLVLHGLIAAYREFISRKDGKKYRVVTVYGDLVAGEDVLCQIDGYDVFVDSPGYARGEMVSFPARLQFARDGSGKPIVRLYVYEGVR |
| Ga0308411_1000209715 | F002372 | AGGGGG | MPTRREDRLWSVAHQRSVHLRALLDTLDGIDVGVTYELDYYPYAVVELLRVREDAPPLVLRSVYISANRQWEYHSEYTLRVVEAALRLVEEYRSDPSLGGAEAVWA |
| Ga0308411_1000209716 | F015735 | AGGCGG | MVWHYWSVEWHPRHDPPADLPRVVCIARRAVSDPFSGPGPFPGDIDRALCYWNRIASGGACDHGAGYEVAWRVSVVADDPDGDAPDGAWSDDPVCRVRRRLLRWIMRSQCPLFADFFAVEHFRDHPEYFGLEPGA |
| Ga0308411_100020972 | F015735 | AGGCGG | VIVYHHWSVEWHPRHDPPADLPRVVCIARRAVSDPFSGPGPFPGDIDRALCYWNRIASGGACDHGAGYEVAWRVSVVADDPDGDAPDGAWSDDPVCRVRRRLLRWIMRSQCPLFADFFAVEHFRDHPEYFGLEPGA |
| Ga0308411_1000209722 | F001381 | GAG | MQYVIATLYVLVWLALAALAALWLPIWALPVALVQLAVAYVMLRSWLTAAAGGDDGA |
| Ga0308411_100020977 | F000855 | GAGG | MDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDVWNGWMDSLLHPAQAMPSIPALRFIVDWLSNLVDYTRLMYMLVDYVAYASVAQQALLAQLAIVAVGLGFRAWLVIRRIVLVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |