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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031812 Open in IMG/M |
| Scaffold ID | Ga0308411_10002590 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12197 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025421 | Metagenome / Metatranscriptome | 201 | Y |
| F026171 | Metagenome / Metatranscriptome | 199 | Y |
| F026459 | Metagenome / Metatranscriptome | 197 | Y |
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F029920 | Metagenome | 187 | Y |
| F059420 | Metagenome | 134 | Y |
| F059686 | Metagenome / Metatranscriptome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308411_100025901 | F059686 | N/A | TESWAFIGRAVQANALTSSLPTRIVTPVLSRHASWFVDSVGTAHGTTQIPGTVIEAELSINTNRHLKMFEGSQPLDWGEGRREAQLSITAEFNSTAKAWVDALLTDRVARNIRVNFVETANTRELRIDFVGLIAEPIELFGDRDGNMIVELTFKALVAGPLNNWLQIRTINGVTTLP |
| Ga0308411_1000259010 | F026171 | GGAGG | MNRSLRKLREAVRAARLADMPASKVLKALADMPEARAFRLTPDVLRRMLLESLPEQYATFLFDQAGYRVEMSLADLAYFAKHDEILVELVVSIILCLDKE |
| Ga0308411_1000259012 | F026459 | AGGAGG | MNSQKVQMLRSINQIESTIRPPVNSLSMFIAALTAMGSGETVQRALYRVERRAPEDVIKDAEQLIDVLYEIGEGVIAMKLQRRLAELREGQSSDAIAGLWELVDMLPNDAYMSFGFAVECAQVRCGEHPNPQELLLDMDFDREGFRFGQAWQFWGEHAPEAMKVARAAFIAALLHAAGLGDEPEYPEPLAD |
| Ga0308411_1000259017 | F029920 | N/A | MISMSDLERTFREERPLKGFIAPGLALSYQPRAYLAIGRIERQPDADDIALVIELAREAFIFLARKPQREVISSNGVTWHLARWPLQRESVADHLQLRERRNR |
| Ga0308411_100025902 | F025421 | N/A | MIDLTKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPAPLPATSATE |
| Ga0308411_100025905 | F059420 | GGAGG | MEIELFRGSSTLTTLHYRNAPGQYSWVLRDFQGDLMDEVEVLTRDAVGGRTLIAGWQGRARRIVIVLDVQGTSMPNLHAAIQELESHVRWRRNEPPVLVLRVRAQATSPWSVQSVILEQMNAQFEDDQYRATVTMRFACRSVYWRELIGTVSASNNTLTGNAFVVDLSTMTFTPITGISEAITNIDYRPASNEWIIFTTTQVWRAPATGGAAALIGLVTGSTGLRGCVAHDGNILAVALGANQLVRFTYPSSAPTVLGSFNGAPFRVRRFGDQYASVGEFSQYQTTTGLAGMVITNVNGVITNTFSPFPSSTIFPGGGRIRDVLLRDNIGVAIAHRAASPSQSWVVVWSSQVAPYYVAEGASTWGPLEIDQSSAIDDVTICADSWIHAGRTFNTLCRLRNLGGIVPYAYPMVPVGGVQDGCAVERFTFATSEPRKAFRLGDDGTTMPLFTASANSVAVRRVNNLMCIGYAATANVWTPLTVDVSTIANTGATAEIVPRLAGLALPVFSCYSKVDTEILGEVIDPQVQADNYEPKYHGGGTVTPLPGTRYERMFRGSMNEAINRYWFAVGGSVSSNSVTLNRYKHDWR |
| Ga0308411_100025906 | F028964 | GAGG | MEVAECELEISVRAPSYELSAYGDVLMAMLPDRREYYFVTAIERRNTYYVFRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAKGFPLVWWFECGRWCAAKDATENYGVEPSIALVFAHGLPRNGLFRPRWASSIKYEAWVYDRSQPTAGVALGYGHGQDRDVARARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGEHQRCAGIAHVVSERYVITGGQVSSAEVGVVQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |