NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10003004

Scaffold Ga0308411_10003004


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10003004 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11341
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y
F008135Metagenome / Metatranscriptome338Y
F012676Metagenome / Metatranscriptome278Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000300410F002372AGGAGMPTRREDALWQIVHRRSSHLRALLDTLDDIDVGVTYELDYYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFTLRVVEAALDLVEEYRADPSLGGADGV
Ga0308411_1000300411F002795GGAGGMATDNRLVLRGMVAAYREFTSRKNGKLFRVVTVFGDLVVGEAVLCSVDGYDVFVDSPDYARGEVVAFPARLQFARDGSGRPVIKLYVDEGVR
Ga0308411_1000300412F008135AGGAGGMRAMNDPRTERVLTEAGAGIARALDDRQRRAVALAIEVCWYIVAALLPDGSVTFGDVVRLLRWFVTGFREADDGDG
Ga0308411_1000300413F002229GGAGGMVTLLTFDGVEDVDYAPSDAEIRASLDDSGLYGMVLGGVTWMRLASGSGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRSMCGDSCVDDEDEED
Ga0308411_1000300415F004024AGGAGGMHSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRDR
Ga0308411_1000300416F002978GAGGVGVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPHPLPGTTPPGA
Ga0308411_1000300417F000642GAGGVQEISIALAICAVGAAIWYMRRREAGAGRVTGWLLLYDDVGGWRALPAAYGDSGIVADGVTYPASLPALRVGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAMFAYFTWAQVSALQSLVAQILALVGER
Ga0308411_1000300419F000855AGGAGMDWLEDFWSKIVGWWDHASANVYNGIVSFVNSLVEIWNGWMDSLLHPAQTMPSIPALRWIVDWLGGIVDYTRLMYMLVDYVAYAGIVRQALLAQLAIVTVGLAFRAWLVIRRVVLVS
Ga0308411_100030043F007172AGGAGGMNTLERRTFAAALRAAKQDAYCRAVGGFVIARLSDGTIDWFPAGQTPHRGGEPDRNAVILGKWRWNYRRWSRVA
Ga0308411_100030044F012676AGGAGGMTSIKLAARWDGSPMSLTNPDTTWVRLLETRGIAYAAHLSEPAGWRLVVCDERRFTRALHALRKYGVYGICEWTYDIHP
Ga0308411_100030049F015735N/AMVVYHHWSVEWHPRDVDPPGGLPRVVCIARRAVSDPFAGPGPFPADVDRALRFWNLVVSGGATDHGAGYEVVWRLSVVADDADGDAPPDGAWSDDPVYRARRRLLRWIMRSQCSIPALADHFAVEHFWASPAYFGLLEG
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