NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10004165

Scaffold Ga0308411_10004165


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10004165 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9562
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040512Metagenome / Metatranscriptome161N
F044245Metagenome / Metatranscriptome154N
F044342Metagenome / Metatranscriptome154N
F057955Metagenome / Metatranscriptome135N
F068330Metagenome / Metatranscriptome124N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000416512F044245AGGAGMIDAMLSIPFRYPLLKKMNRTDAMVMSAILFAFRLHQQTGKYFYLSDAKIMEWTGFKRTAIYEARKRLEAEGWLIVKRGHGGHNMYMITDAVIARLEEADGQSREQQQERLRKAAEKAVSELNVEQTIARILLAFILRTGRMPTKKALRRWIVAARKIKEHGYSAETIADLIRKEDRSLFALLKRIEQGAVKKKKRIEYEVTYDPERGWLAIPHEVEVVEEALEAINERL
Ga0308411_100041652F057955N/AMIDLIEFFTTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDIGRLIDKAEMTIEELEKTRSWRKDV
Ga0308411_100041653F040512GGAGMFDLLANATVAGLSVVSSRALEQYDWFQRLAPETKRLIAVAIAAFIALAMHMISAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308411_100041654F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESVLITDGKLKVTFCVPLFGITERLLSLKRDRLAESQSPEQLRMPL
Ga0308411_100041655F068330GGAMKMNDKLINDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGVMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSAYIVSMASRNPVSGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFVAIKSNIQHQIERRQKGGRYDYFDLIVWAMFGVIVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETTPKSSARLDEQFATNGVANRQGVKM
Ga0308411_100041658F044342AGGMLMKEKKMNDPVIPVTMHLPKSVVERFKRKAVELIPEEKEEAPSLLLTLFINYMSSDEYWCLFVPDLTREDYKKWQEMANQVYDSIYETVKYHGAGMFPGEIADLAQAVIAARRMTPDDLIKLIIISARYNQVMWKRNDSNKDSPAPLQ
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