NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10004593

Scaffold Ga0308411_10004593


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10004593 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9068
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F031016Metagenome / Metatranscriptome183Y
F048124Metagenome / Metatranscriptome148Y
F076715Metagenome / Metatranscriptome117N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000459313F076715AGGAMWWKIEEVPHQELEEWASAVYSCERKAKRDPATRAVGVFVMFVREGETRPEYAPGDKAPEGAYLVGRWTLKPPKGWMWYE
Ga0308411_1000459314F005028GAGGMRDADLRAAMRFFAERLRGVELKNAEATDAGLLRWTRHKLRNDAQAVAELMLKVGYRATYIRYFLRYHVPALRESAAVGETYADPSAADVHLGLCWRLDENVLTVYTDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVRLLAKTLERKAKNVVED
Ga0308411_1000459315F018115AGGAGVNKEAERYVRWYAHLPAHVPLDRHAARALLRRALANREELAEYLLKQECVPSLLGEFINRHWNDAISDAPSSAALRLASAVMRALERIEDARDRRAAEWWFRLGLVPSVRVLRQLCVRISDA
Ga0308411_1000459316F008499GGAMKSRSEPRWKRKERDALRALQAVFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGNDPGFAVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERAGE
Ga0308411_1000459317F004307AGGAMFKELINHNGSRSERPELNGAYTAIFRGVTQRQRPTFETRNAPEPVMEDVFVFDFEIEDDDGQPLRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVAQMTDAQLDRAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARMRKTKEDEVPF
Ga0308411_100045934F087842GGAGGMITIWGGYVAVGDARVYLIVFDGERIGGVDERNAQRTFYQTRDERIVVHEVVFGKRRCGITYDQSLVYVFSSITEACAHLDVPPQHIAQTRGDAALPPVEAPTLTLEEWASGVGTY
Ga0308411_100045935F002982GAGGMKLQFERHPHSICAVLTDAGECDRIINVDRASDAIDALTLDVAPAAYTPLDALFALPRVVLVEIERREGGWRVEVAYWNGALGALAQYETDAATLSEALARCVWALAR
Ga0308411_100045938F031016AGGAGGMTTITIWKGSRRVVLGDDVEFVEYETFVGEELGSVWEEENSRGTQTTFYRTHDGRIVAHVVRWSRWENEATYAYIHVFPALDGVNGAAAMFWRELEQAGLIPPRTVGLDE
Ga0308411_100045939F048124AGGAGGMATISIWRGYRDWDAGSDYEIVSFTGSEIGSVRLTDTEADTQYRVFRDEDDNIIIFFVERRGHYCEAEIYEYPDLEAAAKDYAFILRKAGVI
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