NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10008333

Scaffold Ga0308411_10008333


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10008333 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6474
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F044842Metagenome / Metatranscriptome153Y
F069791Metagenome / Metatranscriptome123Y
F074922Metagenome / Metatranscriptome119N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000833310F074922AGGAMVDSMLAQFLNVALDVQTPAYAGIRVTGGTLAASDGVILVAFKLNSEYIRGEGMIPPATARALAALANEVYLEYVEVDGTAVSLVTREQYADRAECLTVSFPPFACRTLRIESFLPRCTPPDATLLCEAPSLKLVKAARLTDFVELVDKPVRGSELFQLKLPDAKVWYSVRQLREGLRLFRARDTVSVYKNEQGWLSFRDDWGRLFAVTPFVKRD
Ga0308411_1000833311F069791AGGAMPSSELAHFLNVAIDIQAPPFAGVHVDDGVMAATDGVMLVAKKFDDKVFLRGRGSISPKAARVLEALAEGTWIGSIAVVGNRVTATAQTTRYDEHLGAEVAGGYREIELEFYCPRVPIARMLAVLTDESRGWQQIVENPNLKALKEMSVRGYVALADDPRDNGELFRSKAIE
Ga0308411_100083332F044842AGGAGGMEEIELWCGVRGEGFPSTQRVCFTGEFLGVVDVARADDWVERCVLYRTEDGRVVVHQLRLSLFDDGADVAEVYILPTLDAGEGEQRLSQHCI
Ga0308411_100083336F002982GGAGGMKIQFERHPHAICAVLTEPSACDRIINVDRASDAPRVFALDIDPLAFKPLDALFALPRVVLVEIERRAGGWRVEVAYWNKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308411_100083338F087842GAGGMTTIRIWGGYVTVGDARVYLITFDGERIGGVDERNAQRTFYATADGRVVVHEVRIGKRRGGRTYDQALVYVFSSITEACAHLDVHPQRIAQTRGEATLPDVDAPTLTLDEWVRGVGTY
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