NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10008664

Scaffold Ga0308411_10008664


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10008664 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6337
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100086642F007404AGGAGMDIIEILQLLAAGHSGLTAIDYVWNAVFGAIGAATAYLADNEGEVILPRYDAEQHSVELGALGRVLTGAGAGVLVGYSGYIPFIAGVVAPTLLPILIDKVTAFVGRGRR
Ga0308411_100086643F014738GGAMKLDVLLLVSAFALAFVHPDAAQVAASAVLVLLVTRIERGRRARKKRSAPVVH
Ga0308411_100086644F072382AGGAGGMKTVYHTKDVYFPAFSIKIEPKRGTWFADVYVRYAENPSLDTKYSAYIGADDFLAGTPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTREGWGVNITLCSELENQYIHGEGATPADAIRNSNYPPPLRNV
Ga0308411_100086646F016100AGGAGGMVTSVKVERFKEYSELVRVISRCEAAPATNNDRIVPLNHELLIGSHLPEPDWHRLGALVVAIFRSFAVVDVEIWLTDAGVWVADALVDFGGVRRLRKGEGDTPLQAMIELITDIQRY
Ga0308411_100086648F006252AGGAGGVRSFDEQAAFGLPYEYLIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDDGQPVAALEVKRRSIRSDTYPTTIIPQSVVDAARHLTIPTYAAILFTDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQPPRRSA
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