NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10009279

Scaffold Ga0308411_10009279


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10009279 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6084
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002229Metagenome / Metatranscriptome580Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100092792F008135AGGAGGMRAMNDSRTERLLVSAGTSIARVLDDRQRHAVALALEVCRYIVAALPPDDGLTFGDMVRLLRWFGEGFNRDAEGDDGDE
Ga0308411_100092793F002229GGAGGMVTLLTLDGVEDVDYAPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVVCNRRVTATLAAIGWCWVADGFGARGYWSPALACVPAEVRVMCGCVEDEDGDDED
Ga0308411_100092795F004024AGGAGGMRSERDYLRQSSLNDDDMMFLDARATLAAALARAVAGYSDGRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308411_100092796F002978GAGGVSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDADDSDSVSLARRAIATLRAAGADCSALPAVLPGSPGAPGA
Ga0308411_100092797F000642AGGAGMQEISIALALCAVGAAIWYMRRREVSGRVHGWLVLYDDLGGWRALPAVYGDAGVVADGVTYPASLPSVRVGRELIWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQSLVAQILALVGER
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