NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10009637

Scaffold Ga0308411_10009637


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10009637 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5948
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100096372F000855AGGAGMDWLEDFWSKVVGWWDHASANIYNGIVAFVNVLVDVWNGWMDALLHPAQAMPSIPALRWIVDWLSNLVDYTRLMYMLVDYVAYASVVQQALLAQLSIVTIGLAFRAWLVIRRIVLVS
Ga0308411_100096373F001381GAGMQYVIATLYVLLWLALAAVAALWLPLWALPAALVQLAVAYVMLRAVWLTVARDD
Ga0308411_100096374F000642AGGAGMQEMSVALALCAVGAAVWYMRRREVGAGRVTGWLLLYDDLGGWRVLAASYGDAGIVADGVTYPASLPAIRVGRELVWIARCDAAALIDHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVAALQALVAQILALVGDK
Ga0308411_100096375F002978AGGMSSVRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAGDPDSVALARQAIATLRSAGADCSALPAVLPGSPAPGA
Ga0308411_100096378F002229GGAGGMVTLLTMGGVEDVDYTPSDAEIRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVVCNRRVTATLAAIGWCWVADGLGARGYWSPALACVPAEVRSMCGGCVEDEDVEVDDGDE
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