NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10012336

Scaffold Ga0308411_10012336


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10012336 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5135
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100123363F004791AGGAGGMTTPAEIYDIDAIRVDRAALSIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHQFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDAIGDEGNE
Ga0308411_100123364F005302AGGAGGMAHSGVLAGLFAGNFAVEISTNNTTWTAVSNATVKIDDVELNRPSGEAFVGGSSDYATITIGKREPVEITLTFLYNEDTNSAANTIFDQFQSATPRLGVRWSPRGLIGGARAYATSNDGGTSFDLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAP
Ga0308411_100123365F002970GGAGMSFSTLVDIVELLAGLVVQFDGNAVPVQRLTTQPNWTDAAELPVRIIPALGGLRLVEGGVYTPTRSMRAVWEIDDLLLVRDVGMGRGVADTATSLVAYIEQYVELLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVVMTTRFAHLVRAPSL
Ga0308411_100123367F105262AGGAGGMLVQETIQPLLRYFNANVTAPADTSVISIANAQVVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKAITSLASNSSYEIFVTGAEAYAAKTLASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTGWTRVL
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